Perform your research unhindered by software subscriptions, upgrade pathways, or restrictive dependencies.

Perform Your Research Unhindered

Modern in-situ TEM experiments do not produce just images. They produce experimental events: images, timestamps, microscope conditions, holder state, temperature, bias, current, gas flow, pressure, liquid conditions, sample notes, and system history. Colibri is designed to preserve that experiment.

Colibri Platform™ is Hummingbird Scientific’s open data platform for in-situ microscopy. It captures and aligns experiment metadata with image timing, creating structured records that can move across OEM software, open-source tools, institutional systems, Python workflows, and future AI environments.

Colibri is not a closed software ecosystem. It does not replace the microscope operating system. It is not designed to own the customer’s analysis workflow. It is an open data layer that connects the experiment.

The customer owns the workflow.

Colibri Platform™

  1. Hummingbird Control™ — direct holder and accessory operation
  2. Hummingbird Connect™ — microscope/OEM/lab workflow integration
  3. Automation — AI-ready, metadata-ready, and Python-ready workflow orchestration
  4. Data Managment — metadata, telemetry, export, archive, experiment record

Capture the Experiment. Not the User.

Closed software platforms often promise a unified interface, workflow, or ecosystem. In practice, that model can turn software into a layer of control — where the interface becomes the gateway, and the gateway favors the vendor.

Colibri is built around a different idea.

The microscope remains the center of the microscopy workflow. OEM environments are respected. Open-source tools remain available. Facility data systems remain in control. Researchers decide how their data is analyzed, stored, and reused.

Colibri’s role is intentionally focused: to capture, align, and export the experiment without restricting it.

Why It Matters

AI-ready microscopy requires more than pixels. It requires context.

An image without temperature, bias, gas flow, pressure, liquid conditions, microscope state, sample history, and timing information is incomplete. It may be useful visually, but it is difficult to reproduce, compare, search, or use in automated workflows.

Colibri preserves the data around the image. That is the difference between a file and an experiment record.

Colibri’s Role in the Workflow

Records holder and controller metadata
Replace the microscope operating system
Aligns experiment conditions with image data
Force researchers into Hummingbird analysis software
Exports open records
Lock data inside a proprietary database
Supports OEM and custom workflows
Require paid software subscriptions where avoidable
Enables open-source and Python workflows
Make Hummingbird the center of every workflow

Closed Software Platform vs. Open TEM Data Platform

Some platforms try to centralize the workflow inside one vendor software environment. Colibri takes a different approach: preserve the experiment record and let the customer choose the workflow. Colibri Platform is Hummingbird Scientific’s open data approach for modern in-situ TEM.

Software becomes the center of the workflow
The experiment remains the center
User is pushed toward one vendor ecosystem
User can choose OEM, open-source, institutional, or custom tools
Hardware and software dependency are linked
Data portability is the priority
Metadata is useful mainly inside the platform
Metadata is structured for downstream use
Analysis path is vendor-defined
Analysis path is user-defined
Platform control is emphasized
Experimental context is emphasized

Software Resources

Explore external software tools, research communities, and supporting resources used across microscopy workflows. These resources reflect the broader ecosystem beyond the Colibri platform.

Frequently asked questions

How is Colibri Platform™ different from closed software platforms?
Is the Colibri Platform™ compatible with my microscope?
What software controls Hummingbird Scientific TEM holders?
What is Hummingbird Control™ Software?
What is Hummingbird Connect™?
How is Hummingbird Control™ Software different from Hummingbird Connect™?

Discuss how Colibri Platform™ fits into your workflow

Hummingbird Scientific builds open in-situ microscopy infrastructure. Colibri preserves the experiment record so researchers can use the OEM, open-source, Python, LIMS, cloud, HPC, or custom workflows they already trust.

Our team would be happy to discuss your goals and how Colibri Platform™ fits into your workflow.