
Perform your research unhindered by software subscriptions, upgrade pathways, or restrictive dependencies.
Perform Your Research Unhindered
Modern in-situ TEM experiments do not produce just images. They produce experimental events: images, timestamps, microscope conditions, holder state, temperature, bias, current, gas flow, pressure, liquid conditions, sample notes, and system history. Colibri is designed to preserve that experiment.
Colibri Platform™ is Hummingbird Scientific’s open data platform for in-situ microscopy. It captures and aligns experiment metadata with image timing, creating structured records that can move across OEM software, open-source tools, institutional systems, Python workflows, and future AI environments.
Colibri is not a closed software ecosystem. It does not replace the microscope operating system. It is not designed to own the customer’s analysis workflow. It is an open data layer that connects the experiment.
The customer owns the workflow.
Colibri Platform™
- Hummingbird Control™ — direct holder and accessory operation
- Hummingbird Connect™ — microscope/OEM/lab workflow integration
- Automation — AI-ready, metadata-ready, and Python-ready workflow orchestration
- Data Managment — metadata, telemetry, export, archive, experiment record
Capture the Experiment. Not the User.
Closed software platforms often promise a unified interface, workflow, or ecosystem. In practice, that model can turn software into a layer of control — where the interface becomes the gateway, and the gateway favors the vendor.
Colibri is built around a different idea.
The microscope remains the center of the microscopy workflow. OEM environments are respected. Open-source tools remain available. Facility data systems remain in control. Researchers decide how their data is analyzed, stored, and reused.
Colibri’s role is intentionally focused: to capture, align, and export the experiment without restricting it.
Why It Matters
AI-ready microscopy requires more than pixels. It requires context.
An image without temperature, bias, gas flow, pressure, liquid conditions, microscope state, sample history, and timing information is incomplete. It may be useful visually, but it is difficult to reproduce, compare, search, or use in automated workflows.
Colibri preserves the data around the image. That is the difference between a file and an experiment record.
Colibri’s Role in the Workflow

Closed Software Platform vs. Open TEM Data Platform
Some platforms try to centralize the workflow inside one vendor software environment. Colibri takes a different approach: preserve the experiment record and let the customer choose the workflow. Colibri Platform is Hummingbird Scientific’s open data approach for modern in-situ TEM.

Colibri Platform™ Components
Hummingbird connects the experiment. The customer owns the workflow. Hummingbird Scientific builds open in-situ microscopy infrastructure: stable experimental hardware, Colibri experiment records, OEM-native workflows, and open data handoff to the tools researchers already trust. Explore the pillars of the Colibri Platform™ below:
Hummingbird Control™ Software
Hummingbird Connect™
Open Data Management
Automation and AI-ready workflows
LIMS
The Future

Software Resources
Explore external software tools, research communities, and supporting resources used across microscopy workflows. These resources reflect the broader ecosystem beyond the Colibri platform.
Open-Source Software Ecosystem
TEM Software Publications
TEM Software History

Frequently asked questions
Compatibility depends on the microscope manufacturer, model, holder type, control hardware, and application requirements. Contact us to discuss your configuration.
Hummingbird Scientific TEM holders are controlled using Hummingbird Control™ Software, application-specific software for in-situ TEM and STEM experiments. It enables precise control of temperature, gas and liquid environments, electrical biasing, and holder positioning, supporting advanced electron microscopy workflows.
Hummingbird Control™ Software is a family of software tools designed to operate Hummingbird Scientific holders, gas systems, heating systems, biasing platforms, nanomanipulators, and other in-situ microscopy accessories.
Hummingbird Connect™ is a powerful connectivity platform that brings your entire electron microscopy workflow together through seamless OEM integration. By enabling direct communication between Hummingbird systems and leading microscope manufacturers’ hardware and software, it simplifies setup, enhances data flow, and ensures all components of your experiment work in sync. The result is a more efficient, reliable workflow that empowers researchers to focus on discovery instead of integration.
Hummingbird Control™ Software operates Hummingbird Scientific hardware. Hummingbird Connect™ supports broader connectivity discussions between holders, microscope platforms, software environments, and laboratory workflows.

Discuss how Colibri Platform™ fits into your workflow
Hummingbird Scientific builds open in-situ microscopy infrastructure. Colibri preserves the experiment record so researchers can use the OEM, open-source, Python, LIMS, cloud, HPC, or custom workflows they already trust.
Our team would be happy to discuss your goals and how Colibri Platform™ fits into your workflow.